Datasets

RNA-Seq analysis

Database

EggNOG

conda activate ngspipe-rnaseq-basic
download_eggnog_data.py -y --data_dir ./
tar -zxvf eggnog.db.gz

gene_ontology

ngspipedb download -n ngspipe-rnaseq-basic -t database
tar -zxvf gene_ontology.tar.gz

tree database looks like:

database/
├── eggnog
│   ├── eggnog.db
│   ├── eggnog_proteins.dmnd
│   ├── eggnog.taxa.db
│   ├── eggnog.taxa.db.traverse.pkl
│   └── wget-log
└── gene_ontology
    ├── go-basic.obo
    ├── go.obo
    ├── goslim_generic.obo
    └── goslim_plant.obo

2 directories, 9 files